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method
Our laboratory has expertise in applying a fluorescence microscopy method to analyse proximal signalling events induced by cross-linking C-type lectins.
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analysis software
The GenePix 4000 software package was used to quantify microarray fluorescence in a yeast microarray experiment.
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flow cytometer analyzer
The FAX analyser available in the laboratory is used, e.g., to measure transfection efficiency.
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flow cytometer
The flow cytometer at the disposal of the laboratory is used, for example, to assess Th subsets.
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flow cytometer analyzer
The FACS analyzer avaiable to the lab is used, among other things, to assess protein expression of tumor antigens or soluble proteins.
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device
There is a GMP facility for conduction of phase III clinical trials available. The structural up-grade of this facility has limited the number of patients recruited.
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Gene gun
The gene gun system available to the laboratory was used, e.g., for micro-particle bombardment of murine skin.
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Databases, factual
The Genopolis microarray database serves as an easy interface for the data generated by the Affymetrix GeneChip platform.
DC transcriptomic data produced in the past 4 years has made been an accessible resource for data sharing and data integration accessible to all the DC community. The experiments on mice and rat are currently being annotated and conserved in the Genopolis database. Direct access to the primary data held in the Biopolo database is responsibility of the BIOPOLO Project Management System (see http://www.biopolo.it/).
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labeling method
Experience has been gained in identifying DC presenting a specific peptide via a sensitive immunofluorescent staining technique.
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flow cytometer sorter
This FACS analyser that is available to us is used, e.g., for the analysis of dendritic cells.
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Gene gun
We have expertise in DNA vaccination with the gene-gun available to us to directly transfect skin DC in vivo either with expression plasmids or siRNA plasmids to knockdown target genes and follow the effect on the resulting T cell response.
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microarray platform
Genopolis hosts a microarray platform that uses the Affymetrix GeneChip® microarray technology for genome and transcriptome analyses. In 2008, this platform was enhanced by the incorporation of a new institute [the Wellcome Trust Centre for Human Genetics] to provide ‘Illumina’ microarray profiling.
The following services are currently available:
Whole genome genotyping applications, which include:
1. family-based association studies
2. cancer genetics
3. population genetics
4. chromosomal copy number analysis
Whole genome gene expression profiling application
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fluorescence microscope
For our work, we have a fluorescence microscope at our disposal. We use it, among other things, to analyse DC distribution in spleen and how this is affected during inflammation driven by stromal cells or hematopoietic cells.
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ELISPOT assay
Knowledge on ELISPOT analyses is available in our lab for immunomonitoring of patients treated with Apo-DC +/- GM-CSF.
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ELISPOT assay
Our lab has expertise with Elispot assays. We evaluated the capacity of autologous DC and HEK293 cells transfected with relevant HLA alleles to function as T cell targets in Elispot assays upon transfection with tumor antigen encoding plasmids.
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ELISA assay
We have experience with ELISA assay for IL-17 from e-Bioscience.
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ELISA assay
We have expertise in performing ELISA assays. For instance, we use the ELISA kit for IL-12 and IL-10 from Biosource to evaluate cytokine accumulation in supernatants at 24h, according to a standard protocol and it was measured at 450n
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electroporator
Our laboratory has an electroporator at its disposal. It is used for instance for RNA electroporation into DC.
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ELISPOT assay
Our lab has experience in carrying out ELISPOT analyses. For instance, an IFNgamma ELISPOT assay with PBMC loaded with peptide pools (each consisting of 10 15-mers, which overlap with 11 aminoacids) was done for a study on antigen recognition.
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electroporator
We use the electroporator at our disposal, for instance, to electroporate dendritic cells with melanoma antigen RNA .