DEADLINE IS NOW EXTENDED TO March, 14th.
Internet and the World Wide Web have made possible unimaginable levels of information sharing and collaboration in science, as well as in other human activities. In life science, software-based collaboration occurs at different scale levels, from small collocated scientific groups to large international communities. It also happens in various ways, from tight-interaction in ontology design to crowd-sourced data annotation and analysis. The idea of the web of data has been particularly successful in the biomedical field, given its potential to ease integration and exploration of large, complex, and heterogeneous data sets. Advanced knowledge representation and data exchange standards have been widely used for such purpose. These same approaches are applied in developing collaboration models and software to support such models.
A few notes from the SEMIC 2013 conference that I've recent attended, which happended the same days of the Open Data Charts release, by the G8.
My personal lib of utils is now a quite public project, jUtils (part of ISA-Tools) and the code in it doesn't come from myself only any more. In this post, I'd like to give a brief overview of what it offers. Who knows, that bit you were about to code yourself might be described in the next paragraphs.
WOW! This is the first (real) post on my site, after three (three!) years of stop. A lot of things to do, personal up and downs. But here I'd like to talk about another serious reasons why I haven't worked to this site for such a long time: I wanted to upgrade the version of Drupal, the CMS both this new and the old site were based on. Still at Drupal 4.7 version, the fact that they have come at 7 (and almost 8), started making me feel like I was walking over eggs (and you should feel the same in similar cyrcumstances).
I already expected this to be painful, so I've waited until I had some time and was inspired enough. And yes, first thing to say about is that Drupal has pros and cons and, among them, the upgrade process, despite significant improvement, is still a big thumb down. It took me several months of spare time to face it and below you find some account of this little adventure.
Disclaimer: this is going to be rather technical and if you want to embark on a similar experience, you'll do it at your own risk. If you don't even know what Drupal is (or a CMS), don't bother reading on…